Earth, Ecology and Environmental sciences

May 02, 2024 - 16 h 00
Thursday

IRBI - Salle séminaire Faculté des Sciences et Techniques
Avenue Monge, Parc Grandmont
37000 Tours
France

2nd joint Workshop of the IUSS Working Groups Digital Soil Mapping and Global Soil Map
February 07, 2023 - February 09, 2023
Conference

Auditorium du Musée des Beaux Arts d'Orléans
1 rue Fernand Rabier
45000 Orléans
France

Dr Dominique Arrouays & Anne Richer de Forges

Mauro Simonato
Laure Sauné
Carole Kerdelhué
Emmanuelle Magnoux
Jérôme Rousselet
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Climate change is influencing population dynamics of several pest insect species leading to the expansion of their range. Range expansion can be driven also by human-mediated dispersal, with the establishment of new insect populations in suitable areas far from their native range. In this process, interactions between insects and their natural enemies can change due to new environmental conditions or to different rate of dispersion. In recent years, pine processionary moth (PPM), one of the main forest pests in the Mediterranean region, is expanding its range favored by both higher winter mean temperatures and accidental human-mediated transportation. Here we outlined the genetic structure of PPM along its range in France using 23 microsatellites loci, characterizing the main patterns of expansion of this species and identifying the source populations of new colonies in the expansion areas. These data can be employed for developing assignment tools to genetically characterize PPM for a quick identification of their origin area. Finally, we developed a new set of microsatellite primers for the PPM specialist egg-parasitoid in order to track its dispersion following its host in the expanding areas. The low genetic variability found, not directly useful for tracking parasitoid expansion, shed light on the role of bacterial endosymbionts in the population genetic structure of this species.

Cyrille B. K. Rathgeber
Patrick Fonti
Vladimir V. Shishov
Philippe Rozenberg
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This special issue of Annals of Forest Science compiles ten papers on “Wood formation and tree adaptation to climate”, which were presented at “Le Studium” International Conference in May 2018 in Orléans (France). These papers present observational, experimental and modelling studies investigating the influence of climatic changes on treegrowth from the hour to the century, and from the cell to the landscape.

Vladimir V. Shishov
Ivan I. Tychkov
Margarita I. Popkova
Minhui He
Bao Yang
Philippe Rozenberg
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The project addresses a fundamental problem of forest reaction forecast to the climate change and increasing concentrations of greenhouse gases for the terrestrial ecosystems of the Earth. The main target is to produce a retrospective assessment and a short-term forecast of annual tree-ring productivity (seasonal cell production) of the major conifer plant species in terrestrial forest ecosystems around Eurasia forced by climate and non-climatic factors. The analysis is based on an Interactive Information platform “Global Tree-Ring Growth Evolution Neural Network” (www.vs-genn.ru) and datasets available for the European and Asian dendroecological test-polygons. To achieve the goal of the project, we testified the Vaganov-Shaskin model and its parametrization, as a part of the developing IT system, based on direct long-term field observations for the tree-ring sites in Europe and Asia. As a result of the fellowship four papers were published in high impacted ISI journals. Moreover, a special issue of the ISI journal “Annals of Forest Science” is prepared.

Natalia Kirichenko
Alain Roques
Sylvie Augustin
Carlos Lopez-Vaamonde
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Historical herbaria collected around the world are valuable source of data for studying past communities of folivore organisms and tracking their distributions through the time. Here we examined the world biggest herbarium collection stored in the Muséum National d'Histoire Naturelle (Paris, France) in order to explore past Tilia-feeding endophage complexes and their populations in the Holarctic and clarify the expansion history of the lime leafminer, Phyllonorycter issikii Kumata, 1963 (Lepidoptera: Gracillariidae), an invasive pest in Europe damaging limes, Tilia spp. (Malvaceae).

Agnieszka Synowiec
Christophe Hano
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During this fellowship I performed several greenhouse and laboratory experiments, aiming at assessing the phytotoxic and microbiological effects of microencapsulated peppermint (Mentha x piperita L.) essential oil (MPO). The different doses of MPO were applied in the pot experiments either into vermiculite or top layer of arable soils. As the acceptor-species, I used four maize cultivars, one cultivar of mustard and a weed– lambsquarters (Chenopodium album L.). The microbiological analyses were performed using i) commercial strain of arbuscular fungus Rhizophagus irregularis on maize roots by intersection method, and ii) natural soil-microbiota by FDA biotest. I have found, based on the ED50 analysis, that the phytotoxic effect of MPO is both dose and species as well as soil-medium dependent. The biochemical analyses revealed, that the plants’ response to the application of MPO is typical for the allelopathic stress. The microbiological responses to the MPO applications were not clear enough to conclude and should be continued further.

Juanita Mora Gomez
Qian Li
Fabien Leroy
Sébastien Gogo
Fatima Laggoun
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Peatlands are key ecosystems in the global carbon balance due in part to the slow microbial degradation of the organic matter (OM) in peat soils. Role of peatlands as powerful carbon storage systems may be threatened by climate change, leading to a potential huge release of greenhouse gases to the atmosphere. Our knowledge on the mechanisms behind the microbial OM degradation is still incomplete, and it is also essential to develop better management strategies and mitigate global change impacts. In the frame of the present fellowship, the microbial extracellular enzymatic mechanisms of the OM degradation in peat soil and pore water were studied in a French altered peatland, assessing changes in soil depth and warming effect during an annual cycle. Additionally, to the research programme, during the present fellowship a new technique for the host laboratory was implemented (protocol to measure extracellular enzyme activities in pore water and peat soil), the fellow participated in several conferences and seminars, three publication were or are in the process of being published, and a new project with the host laboratory is in developing.

David Giron
Géraldine Dubreuil
Alison Bennett
Franck Dedeine
Marcel Dicke
Lee A. Dyer
Matthias Erb
Marion O. Harris
Elisabeth Huguet
Isgouhi Kaloshian
Atsushi Kawakita
Carlos Lopez-Vaamonde
Todd M. Palmer
Theodora Petanidou
Michael Poulsen
Aurélien Salle
Jean-Christophe Simon
John S. Terblanche
Denis Thiery
Noah K. Whiteman
H. Arthur Woods
Sylvain Pincebourde
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There is tremendous diversity of interactions between plants and other species. These relationships range from antagonism to mutualism. Interactions of plants with members of their ecological community can lead to a profound metabolic reconfiguration of the plants’ physiology. This reconfiguration can favour beneficial organisms and deter antagonists like pathogens or herbivores. Determining the cellular and molecular dialogue between plants, microbes, and insects, and its ecological and evolutionary implications is important for understanding the options for each partner to adopt an adaptive response to its biotic environment. Moving forward, understanding how such ecological interactions are shaped by environmental change and how we potentially mitigate deleterious effects will be increasingly important. The development of integrative multidisciplinary approaches may provide new solutions to the major ecological and societal issues ahead of us. The rapid evolution of technology provides valuable tools and opens up novel ways to test hypotheses that were previously unanswerable, but requires that scientists master these tools, understand potential ethical problems flowing from their implementation, and train new generations of biologists with diverse technical skills. Here, we provide brief perspectives and discuss future promise and challenges for research on insect–plant interactions building on the 16th International Symposium on Insect–Plant interactions (SIP) meeting that was held in Tours, France (2–6 July 2017). Talks, posters, and discussions are distilled into key research areas in insect–plant interactions, highlighting the current state of the field and major challenges, and future directions for both applied and basic research.

Illia Zymak, Arnaud Sanderink, Jan Žabka, Jean-Pierre Lebreton, Bertrand Gaubicher, Anna Zymaková, Miroslav Polášek and Christelle Briois
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A scientific request for an efficient instrument for unambiguous in-situ analysis of the composition of the Solar system rises up, since an abundance of complex organic compounds at planets, moons and interplanetary medium has been experimentally confirmed. New experimental data will unveil chemical history of the Solar System and probable mechanisms of formation of extraterrestrial organic compounds. A space-grade Orbitrap™-based high-resolution mass spectrometer will allow to obtain required data. In scope of this research project, Lab-CosmOrbitrap and OLYMPIA mass analyzer instruments developed within the CosmOrbitrap project were optimized. New sampling systems and ionization mechanisms proposed for the future space-grade instruments have been developed and evaluated. Experimental calibration data for solid (the real Moon fragment) and gaseous samples (He, C2H4, N2 and CO) required for the currently designed space instruments (CRATER, CORALS and HANKA) were measured.

Max R. McGillen, Hajar Elothmani, Yangang Ren, Zhou Li, Mahmoud Idir, Souad El Hajjaji, Véronique Daële, Akkihebbal R. Ravishankara, Wahid Mellouki
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Oxidation of SO2 to sulfuric acid impacts acid precipitation and aerosol nucleation in Earth’s atmosphere in remote and polluted environments.  This oxidation can take place in both the liquid and gas phase.  Only the gas-phase oxidation is expected to lead to new particles because of the clustering reactions of H2SO4. This aerosol nucleation has a major effect upon air quality and Earth’s radiative balance, and is of crucial importance to the chemistry of the atmosphere. 
The rate limiting step in this process is the reaction of OH radicals with SO2 to form HSO3. The pressure- and temperature-dependent reaction of OH + SO2 has been studied many times previously – since its importance was first recognized in the 1970s. Notwithstanding, some of the most recent literature has cast doubt on much of this data, especially under conditions that are relevant to atmospheric chemistry. 
Here, we present measurements of the rate coefficient using the pulsed laser photolysis–laser induced fluorescence technique as a function of temperature (249–373 K) and of pressure in helium, argon, nitrogen and oxygen bath gases (30–600 Torr). In addition, relative rate measurements using a chamber at 760 Torr (N2, O2 and air) were also performed to corroborate our absolute observations. By utilizing these new data, together with the available literature data, an updated pressure- and temperature-dependent parameterization will be provided. This allows the atmospheric impact of this reaction to be constrained with a new level of certainty.
 

Rock Ouimet1,2, Nathalie Korboulewsky3, Isabelle Bilger3
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The use of residual biomass from forest harvesting for energy production is viewed as a means to reduce fossil-fuel consumption. However, the impact of wood energy harvesting on soil and future site productivity remains a major concern. During this fellowship, we analysed why forest biomass harvesting of whole trees in Quebec reduced soil organic carbon (C) and total nitrogen (N) reserves in certain sites. We also estimated soil C and N labile and stable fractions in the Centre-Val de Loire region in France, and its relationship with current soil sensitivity indices to residual biomass harvesting. This research shed new insights on soil properties that could explain their sensitivity or resilience to forest biomass harvesting. We believe that this fellowship made a significant contribution to scientific knowledge and address pressing societal challenges.

Robert A. Marshall
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The Earth’s radiation environment couples to the upper atmosphere through precipitation of energetic electrons in high-latitude regions. This precipitation is driven by electromagnetic waves in the plasma environment around the Earth, including waves generated by lightning discharges. We use data from the DEMETER mission, built and operated by LPC2E between 2004-2010, to better understand the propagation characteristics of these lightning-generated signals and their effects on the radiation environment. Further, we use lessons and heritage from the DEMETER mission to inform design decisions and data analysis techniques for the upcoming CANVAS mission, a collaboration between the University of Colorado Boulder and LPC2E. CANVAS is expected to launch in mid-2024.

Neil C. Sturchio1,3, Daniel Hube2, Patrick Ollivier2
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The present study was conducted to elucidate the connections of modern groundwater pollution to specific munitions materials used and destroyed during and after World War I (WWI).  Large quantities of unexploded munitions are still present in the tunnels and soils of former battlefields. We performed analyses of the isotopic compositions of nitroaromatics, nitrate, and perchlorate in samples of munition and contaminated groundwater collected at three sites along the WWI battlefront in northern France. The isotopic data from these samples indicates a direct connection between the groundwater contamination and the WWI munitions. Potential adverse effects on public health from munitions compounds in groundwater indicate an urgent need for further evaluation of the continuing presence of legacy WWI munitions and their contribution to chronic groundwater pollution in the region.

Alberto Saal, Kenneth Koga, Estelle Rose-Koga, Jabrane Labidi, James Brenan
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 The Moon is a cornerstone for understanding the early history (origin, budget and timing) of volatile elements (H, C, F, S, Cl) delivered to all terrestrial planets. The volatile study of lunar magmatism is the most direct way to reconstruct the volatile budget of the Moon’s interior.  However, this reconstruction is compromised by magmatic processes that modify the initial compositions of the lunar magmas. The final goal of our work is to determine how sulfide saturation and segregation in all the compositional range of lunar lavas have affected the sulfur isotopic composition of the magmas. The determined sulfur isotopic fractionation between lunar silicate melts and immiscible sulfide blebs will allow us to directly unravel the sulfur isotopic composition of the heterogeneous reservoirs forming the Moon’s interior, and therefore, provide fundamental information on the early evolution of sulfur isotopes of the Earth’s satellite. 

Lauren E. Beckingham, Cyprien Soulaine
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Mineral reactions in subsurface energy systems result in deviations from local equilibriums and can impact critical engineering properties of the system, including storage capacity (porosity) and injectivity (permeability). Accurate understanding and prediction of reaction rates and impacts on formation properties is needed for safe and efficient design and implementation of these engineered systems. Precise simulation of mineral reaction rates is limited by a poor understanding of the mineral reactive surface area in porous media. Here, pore scale numerical simulations are leveraged to simulate mineral reactions for varied flow and reaction conditions and the effective surface area analyzed. Numerical simulations of reactions in a porous media mesh are carried out in OpenFOAM® and a new scaling factor, relating the effective surface area to the accessible surface area, determined.

Nébon Bado, Berthet Gwenaël, Valery Catoire
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The work presented is a report on a research stay as part of LE STUDIUM for visiting researchers from September 1 to November 30, 2025, at the Laboratory of Physics and Chemistry of the Environment and Space (LPC2E) of the CNRS in Orléans. This is a research stay whose objective is to apply an in-depth methodology for the microphysical, optical, and radiative characterization of aerosols at the surface and at altitude. This technique is based on in situ measurements taken by the LOAC instrument during flights using weather balloons, climate model simulations, and data from airborne and satellite sensors. This enabled us to understand the measurement methodology using the LOAC instrument, which has already been tested by the CNRS's LPC2E, and aerosol modeling using ECSM2 model simulations. Based on the measurement campaigns carried out, we analyzed the aerosol profile as well as that of PM1, PM2.5, and PM10, and the volume size distribution of the particles. Also, based on aerosol extinction evaluated using the Mie code, we were able to determine the aerosol optical depth (AOD), which is an integration of the extinction coefficient across the atmospheric layer. In addition, this trip was an opportunity to participate in a validation study of the ATLID lidar aboard the EarthCare satellite, which has been in orbit since May 2024. This has enabled us to learn a new approach to the optical and microphysical characterization of aerosols that can be applied in Burkina Faso and West Africa in general.

Thomas Shea, Michel Pichavant, Kenneth Koga, Michael Jollands, Ida Di Carlo, Saskia Erdmann, Estelle Rose-Koga, Remi Champallier
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The booming field of diffusion chronometry allows geoscientists to extract the timing and duration of subsurface magmatic processes that occur prior to volcanic eruptions. The technique relies on modeling step-wise, concentric chemical gradients that form within magmatic minerals as they grow or get perturbed by new incoming magma prior to volcanic unrest. These chemical ‘tree rings’ are smeared with time by element diffusion, so that the amount of time between perturbation and eruption can be recovered if the mobility (diffusivity) of elements is calibrated in the lab at magma temperatures. This project aims to resolve recently uncovered discrepancies between widely-used element diffusivities obtained in simplified systems (e.g., mineral-mineral couples) and those obtained in melt bearing systems (mineral-melt couples). The new experiments carried out during a STUDIUM-supported sabbatical in 2024-2025 confirmed that the presence of melt is responsible for important differences in element mobilities for olivine, perhaps via the presence of H2O. Diffusivities in plagioclase, by contrast, are not influenced by melt or H2O, implying that current community practices are robust. The underlying mechanisms by which these differences in element behavior appear are still being investigated, and new tools recently tested (hyperspectral cathodoluminescence) may hold important clues as to the presence and distribution of point defects in these minerals. 

Juan César Vilardi, Vanina Benoit, Odile Rogier, Beatriz O. Saidman, Philippe Rozenberg
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Larix decidua, the European larch, is an excellent model to evaluate the association between genetic and phenotypic variation with environmental gradients in forest species. In the present work we evaluated the genetic variation of neutral and selective SNP markers together with the variation of eight quantitative traits along an altitudinal gradient in a natural population of this species located in the Provence-Alpes-Côte d'Azur Region (France). Four samples of about 200 trees each were obtained respectively from plots situated at 1350, 1700, 2000, and 2300 m above sea level. In each sampled individual four tree ring variables and four plasticity variables were evaluated. The molecular dataset consisted of the individual patterns of 46388 SNP loci. The joint analysis of molecular and quantitative trait data allowed evaluating population structure, detecting presumptively selective loci, and demonstrating the adaptive significance of the quantitative variables considered.

Alison E. Bennett, Maria J. Pozo, Alison J. Karley, Elfie Perdereau, David Giron. Alison E. Bennett1, Maria J. Pozo2, Alison J. Karley3, Elfie Perdereau4, David Giron4 1 Dept. of Evolution, Ecology, and Organismal Biology, The Ohio State University, Colum
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Plants are exposed to multiple stressors simultaneously, but can receive help deterring biotic stressors from belowground mutualists such as arbuscular mycorrhizal fungi. Previous research has identified that this “help” occurs primarily via enhanced direct defences against chewing herbivores. However, our preliminary data had suggested that AM fungi promote indirect defenses against sucking herbivores like aphids. Here we tested this premise in tomato. We exposed plants to colonization by AM fungi or not, and herbivory by potato aphids or not. We then measured plant biomass as well as changes in volatile organic chemistry over time, and attraction to plants within our treatments by parasitoids in wind tunnel trials. While analyses are ongoing, we found an influence of AM fungi on plant biomass and a trend toward greater attraction of parasitoids to plants hosting AM fungi. Surprisingly we found no impact of aphid herbivores on the attraction of their parasitoids, and no interaction between AM fungi and aphid herbivory on parasitoid attraction. This suggests that AM fungi do, as we hypothesized, promote indirect defences of plants.

Cuauhtémoc Sáenz-Romero, Luc E. Pâques, Philippe Rozenberg.
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The ongoing acceleration of climatic change makes it even more urgent to understand how tree seed sources (provenances) respond when growing in climates different from those they are naturally adapted to, either when planted on warmer or on colder sites than the climate that occur at their native distribution site. We evaluated four years of growth, bud phenology and survival of a Larix decidua clonal elevational reciprocal transplant trial in the French Alps, at Villard-St-Pancrace, close to Briançon (LN 44.9°; LE 6.65°). The experiment has four experimental sites, distributed along a north-faced Alpine steep-slope, at contrasting elevations: 2,400, 2,000, 1,700 and 1,350 m a.s.l. On each site, 4 sets of 30 clones were reciprocally planted, with each set originating from adult trees selected in natural forest plots at nearly the same elevations (2,300, 2,000, 1,700 and 1,350 m a.s.l). Results indicate that: (a) Plot populations have lower survival rates when relocated to environmental extremes within the mountain range, whether to colder sites at higher elevations or to warmer sites at lower elevations. (b) Growth also decreases when they are moved to colder (higher elevation) sites, although in general it increases when they are moved to warmer (lower elevation) sites. (c) Such growth pattern might be in part explained by the phenology of the leader bud elongation: by the end of spring, leader buds have already started to elongate at lower elevations, meanwhile they are still in full dormancy at the highest elevational site.

Earth, Ecology and Environmental sciences
Orléans